Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50243.1Amidohydrolase. (427 aa)    
Predicted Functional Partners:
BAJ50099.1
Amidohydrolase.
 
 
0.927
BAJ51364.1
Agmatinase; Belongs to the arginase family.
  
  
 0.787
BAJ50244.1
Cobalt/nickel ABC transporter ATP-binding protein.
  
    0.750
BAJ50245.1
Cobalt/nickel ABC transporter ATP-binding protein.
  
    0.750
BAJ50092.1
Conserved hypothetical protein.
  
     0.697
BAJ50246.1
3-octaprenyl-4-hydroxybenzoate carboxy-lyase.
       0.685
BAJ50247.1
F420-dependent N5,N10-methenyltetrahydromethanopterin reductase.
       0.493
BAJ50248.1
Hypothetical protein.
       0.471
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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