Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAJ50274.1glycine/D-amino acid oxidase (deaminating). (423 aa)    
Predicted Functional Partners:
BAJ50271.1
Conserved hypothetical protein.
       0.773
BAJ50272.1
DEAD/DEAH box helicase domain protein.
       0.773
BAJ50273.1
Conserved hypothetical protein; AIG2-like family.
       0.773
BAJ51279.1
Glycine cleavage system aminomethyltransferase.
  
 
 0.726
BAJ50636.1
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.718
BAJ50679.1
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.718
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.630
csl4
Exosome complex component CSL4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.
 
     0.629
BAJ49958.1
Aminotransferase.
  
 
 0.561
BAJ51105.1
Aminotransferase.
  
 
 0.561
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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