Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAJ50284.1Conserved hypothetical protein; Memo-like protein; Belongs to the MEMO1 family. (284 aa)    
Predicted Functional Partners:
BAJ51511.1
Conserved hypothetical protein.
    0.995
BAJ51529.1
Pyruvate formate-lyase activating enzyme.
     0.968
BAJ50285.1
Mevalonate kinase.
 
     0.877
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
    0.874
BAJ50286.1
Acetylglutamate kinase.
       0.860
BAJ50283.1
Dihydropyrimidinase.
  
    0.789
BAJ50180.1
Large subunit ribosomal protein L13.
 
    0.744
rpoK
DNA-directed RNA polymerase subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family.
 
     0.740
BAJ50178.1
DNA-directed RNA polymerase subunit D.
 
     0.736
BAJ50181.1
Small subunit ribosomal protein S9.
  
    0.712
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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