Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAJ50322.1Thioredoxin reductase (NADPH). (336 aa)    
Predicted Functional Partners:
BAJ51104.1
Conserved hypothetical protein.
 
 
 0.932
BAJ51517.1
Thioredoxin 1.
 
 
 0.932
BAJ50320.1
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.
  
 
 0.801
BAJ50321.1
Methylcobalamin:homocysteine methyltransferase.
  
 
 0.801
BAJ50323.1
Phosphate uptake regulator.
       0.734
BAJ51327.1
Ubiquitin-activating enzyme E1-like protein.
  
    0.718
BAJ50459.1
Thioredoxin.
  
 
 0.621
rpl24
Large subunit ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit.
  
  
 0.597
BAJ50333.1
Small subunit ribosomal protein S14.
  
  
 0.582
BAJ51453.1
Molybdenum cofactor biosynthesis protein E.
  
  
 0.577
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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