Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAJ50376.1Cyclase family protein. (288 aa)    
Predicted Functional Partners:
BAJ50375.1
Conserved hypothetical protein.
 
     0.865
BAJ50377.1
Conserved hypothetical protein; Bacterial FdrA protein.
 
     0.780
BAJ50206.1
Cyclase family protein.
  
     0.682
rpl31e
Large subunit ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
 
     0.583
BAJ50383.1
Molybdenum hydroxylase family protein, large subunit.
 
     0.530
eif6
Translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
       0.523
BAJ50371.1
Signal recognition particle receptor.
       0.459
pfdA
Prefoldin subunit alpha; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding.
       0.459
BAJ50370.1
Conserved hypothetical protein.
       0.403
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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