Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50391.1Conserved hypothetical protein. (469 aa)    
Predicted Functional Partners:
BAJ51558.1
Simple sugar ABC transporter permease.
 
 
 0.958
BAJ50392.1
Basic membrane lipoprotein.
 
  
 
0.956
BAJ51559.1
Simple sugar transporter permease.
 
 
 0.956
BAJ50390.1
Sugar ABC transporter permease.
 
 
 0.954
BAJ50389.1
Sugar ABC transporter permease.
 
 
 0.943
BAJ50393.1
Sugar ABC transporter ATP-binding protein.
  
 
 0.934
BAJ50732.1
Simple sugar transporter permease.
 
 
 0.928
BAJ51561.1
Simple sugar ABC transporter substrate-binding protein.
  
  
 
0.925
BAJ50734.1
Basic membrane protein A.
     
  0.900
BAJ50388.1
Sugar ABC transporter ATP-binding protein.
  
 
 0.897
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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