Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50402.1Conserved hypothetical protein. (135 aa)    
Predicted Functional Partners:
BAJ51032.1
Homoserine dehydrogenase.
       0.846
rps3
Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
   0.768
rps28e
Small subunit ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 
   0.729
rps4e
Small subunit ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.
    
   0.714
BAJ50002.1
Myo-inositol-1-phosphate synthase.
       0.700
BAJ50370.1
Conserved hypothetical protein.
       0.700
BAJ50429.1
Orotidine-5'-phosphate decarboxylase.
       0.700
rpl37e
Large subunit ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
       0.700
BAJ51352.1
Glycerol-3-phosphate cytidylyltransferase.
       0.700
flpA
Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
   
 
 0.656
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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