STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50431.1Coenzyme F420-dependent N5,N10-methenyltetrahydromethanopterin reductase. (333 aa)    
Predicted Functional Partners:
BAJ51376.1
Coenzyme F420-dependent hydrogenase beta subunit.
 
 
 0.930
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.900
BAJ51479.1
Serine hydroxymethyltransferase.
    
 0.900
BAJ50432.1
Branched-chain amino acid ABC transporter substrate-binding protein.
  
    0.667
BAJ50433.1
Branched-chain amino acid ABC transporter permease.
       0.661
BAJ50434.1
Branched-chain amino acid ABC transporter permease.
       0.661
BAJ51071.1
F420-dependent N5,N10-methenyltetrahydromethanopterin reductase.
  
     0.618
BAJ50430.1
1-pyrroline-5-carboxylate dehydrogenase.
     
 0.596
BAJ50429.1
Orotidine-5'-phosphate decarboxylase.
       0.520
pyrE
Conserved hypothetical protein; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.519
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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