Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
BAJ50442.1Phytoene dehydrogenase. (492 aa)    
Predicted Functional Partners:
BAJ50443.1
Phytoene synthase.
  
 0.997
BAJ50444.1
UbiA prenyltransferase.
 
 
 0.995
BAJ50445.1
Conserved hypothetical protein; Adenosine specific kinase.
 
     0.798
BAJ50034.1
4-hydroxybenzoate octaprenyltransferase.
 
  
 0.570
BAJ50207.1
4-hydroxybenzoate octaprenyltransferase.
 
  
 0.512
BAJ51200.1
Dehydrogenase (flavoprotein)-like protein.
 
  
 0.504
BAJ50441.1
Conserved hypothetical protein.
       0.479
BAJ50447.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.464
BAJ51461.1
Geranylgeranyl reductase.
 
  
 0.458
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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