Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
BAJ50444.1UbiA prenyltransferase. (288 aa)    
Predicted Functional Partners:
BAJ50442.1
Phytoene dehydrogenase.
 
 
 0.995
BAJ50443.1
Phytoene synthase.
 
  
 0.962
BAJ50445.1
Conserved hypothetical protein; Adenosine specific kinase.
       0.762
BAJ50441.1
Conserved hypothetical protein.
 
     0.577
BAJ51026.1
3-oxosteroid 1-dehydrogenase.
  
  
 0.566
BAJ50932.1
Glycolate oxidase.
    
 0.520
BAJ50034.1
4-hydroxybenzoate octaprenyltransferase.
  
   
 0.501
BAJ50549.1
DNA repair protein RadB.
 
 
 
 0.488
ef1b
Elongation factor EF-1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
 
     0.479
nucS
Conserved hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
 
     0.435
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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