Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAJ50477.1Serine protease; Belongs to the peptidase S8 family. (307 aa)    
Predicted Functional Partners:
BAJ50478.1
Hypothetical protein.
       0.701
BAJ50479.1
Hypothetical protein.
       0.701
dnaK
Molecular chaperone DnaK; Acts as a chaperone.
  
 
 0.645
BAJ50719.1
Ca2+-transporting ATPase.
  
 
 0.552
BAJ50104.1
Hypothetical protein; Belongs to the peptidase S8 family.
  
     0.520
BAJ50481.1
Nuclease.
  
  
 0.466
dbh
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis.
  
 
 0.457
BAJ50480.1
Phage-related protein.
       0.440
BAJ50475.1
Hypothetical protein.
       0.429
BAJ50476.1
Hypothetical protein.
       0.429
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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