Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
BAJ50481.1Nuclease. (187 aa)    
Predicted Functional Partners:
BAJ50480.1
Phage-related protein.
       0.655
rtcB
Conserved hypothetical protein; Belongs to the RtcB family.
     
 0.475
flpA
Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
   
 0.471
BAJ50477.1
Serine protease; Belongs to the peptidase S8 family.
  
  
 0.466
dnaK
Molecular chaperone DnaK; Acts as a chaperone.
 
 
 0.442
BAJ50482.1
Conserved hypothetical protein.
       0.416
BAJ50483.1
Hypothetical protein.
       0.416
BAJ50484.1
Hypothetical protein.
       0.416
BAJ50478.1
Hypothetical protein.
       0.415
BAJ50479.1
Hypothetical protein.
       0.415
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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