Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50485.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
BAJ50486.1
Hypothetical protein.
       0.773
BAJ50487.1
Prophage MuMc02, terminase, ATPase subunit.
       0.773
BAJ50482.1
Conserved hypothetical protein.
       0.746
BAJ50483.1
Hypothetical protein.
       0.746
BAJ50484.1
Hypothetical protein.
       0.746
BAJ50488.1
Oxidoreductase.
       0.406
BAJ50481.1
Nuclease.
       0.404
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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