STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50491.1Transcriptional regulator, PadR family. (174 aa)    
Predicted Functional Partners:
BAJ50490.1
Antibiotic ABC transporter ATP-binding protein.
  
    0.850
BAJ50489.1
ABC-2 type transport system permease.
 
     0.843
BAJ50175.1
Endonuclease III.
       0.577
BAJ50492.1
Conserved hypothetical protein.
       0.497
BAJ49982.1
ABC-2 type transport system ATP-binding protein.
  
    0.441
BAJ50023.1
ABC-2 type transport system ATP-binding protein.
  
    0.441
BAJ50086.1
ABC transporter ATP-binding protein.
  
    0.441
BAJ50252.1
ABC-2 type transport system ATP-binding protein.
  
    0.441
BAJ50571.1
ABC transporter ATP-binding protein.
  
    0.441
BAJ50666.1
ABC transporter ATP-binding protein.
  
    0.441
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.