STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50515.12,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. (251 aa)    
Predicted Functional Partners:
BAJ50516.1
Hypothetical protein.
       0.605
BAJ50514.1
NAD-dependent epimerase/dehydratase.
  
    0.598
BAJ50513.1
Fumarylacetoacetate (FAA) hydrolase.
       0.548
BAJ49995.1
6-phosphogluconate dehydrogenase NAD-binding.
  
  
 0.499
BAJ50110.1
Fumarylacetoacetate hydrolase family protein.
  
  
 0.409
BAJ50199.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
  
 0.409
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.