Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAJ50527.1Alanine racemase domain protein. (366 aa)    
Predicted Functional Partners:
BAJ50526.1
Hypothetical protein.
 
     0.601
BAJ50274.1
glycine/D-amino acid oxidase (deaminating).
  
  
 0.530
BAJ50361.1
FAD dependent oxidoreductase.
  
  
 0.530
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
     
 0.529
BAJ50524.1
Multiple sugar ABC transporter permease.
       0.523
BAJ50525.1
Multiple sugar ABC transporter permease.
       0.523
BAJ50751.1
Aspartate-semialdehyde dehydrogenase.
  
  
 0.520
BAJ50229.1
Phosphomannomutase; Belongs to the phosphohexose mutase family.
  
  
 0.513
BAJ50424.1
Dihydrodipicolinate synthetase.
 
   
 0.480
BAJ51094.1
Aspartate kinase; Belongs to the aspartokinase family.
     
 0.473
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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