STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50537.1Microsomal peptidase. (344 aa)    
Predicted Functional Partners:
BAJ51021.1
Signal peptidase, type I.
       0.700
BAJ50538.1
Hypothetical protein.
 
     0.578
prf1
Peptide chain release factor eRF subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
 
      0.571
BAJ50539.1
Multiple sugar ABC transporter permease.
       0.497
BAJ50540.1
Multiple sugar ABC transporter permease.
       0.497
BAJ50033.1
Conserved hypothetical protein.
  
  
 0.495
BAJ50992.1
Conserved hypothetical protein.
  
  
 0.495
BAJ51138.1
Hypothetical protein.
  
  
 0.495
BAJ51572.1
Conserved hypothetical protein.
  
  
 0.495
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.