STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50537.1Microsomal peptidase. (344 aa)    
Predicted Functional Partners:
BAJ50538.1
Hypothetical protein.
 
     0.580
prf1
Peptide chain release factor eRF subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
 
      0.571
BAJ50540.1
Multiple sugar ABC transporter permease.
       0.498
BAJ50539.1
Multiple sugar ABC transporter permease.
       0.497
BAJ50033.1
Conserved hypothetical protein.
  
  
 0.489
BAJ50992.1
Conserved hypothetical protein.
  
  
 0.489
BAJ51138.1
Hypothetical protein.
  
  
 0.489
BAJ51572.1
Conserved hypothetical protein.
  
  
 0.489
BAJ51058.1
Electron transfer flavoprotein beta subunit.
  
    0.412
BAJ50155.1
Hypothetical protein.
 
  
 0.400
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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