Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50538.1Hypothetical protein. (522 aa)    
Predicted Functional Partners:
BAJ50539.1
Multiple sugar ABC transporter permease.
 
 
 0.938
BAJ50540.1
Multiple sugar ABC transporter permease.
 
 
 0.930
BAJ50073.1
Multiple sugar ABC transporter permease.
 
 
 0.783
BAJ50510.1
Multiple sugar ABC transporter permease.
 
 
 0.767
BAJ50525.1
Multiple sugar ABC transporter permease.
 
 
 0.765
BAJ50509.1
Multiple sugar ABC transporter permease.
 
 
 0.742
BAJ50074.1
Multiple sugar ABC transporter permease.
 
 
 0.721
BAJ50524.1
Multiple sugar ABC transporter permease.
 
 
 0.717
BAJ50537.1
Microsomal peptidase.
 
     0.578
BAJ50266.1
Sugar phosphate isomerase/epimerase.
 
  
 0.538
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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