STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50543.1Oxidoreductase domain protein. (363 aa)    
Predicted Functional Partners:
BAJ50266.1
Sugar phosphate isomerase/epimerase.
 
  
 0.832
BAJ50700.1
Glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.692
BAJ50545.1
Oxidoreductase domain protein; NADH dependent.
 
    
0.669
BAJ50541.1
Maltooligosaccharide ABC transportor ATP-binding protein.
       0.637
BAJ50542.1
Maltooligosaccharide ABC transporter ATP-binding protein.
       0.637
BAJ50544.1
Oxidoreductase domain protein; Myo-inositol 2-dehydrogenase [EC:1.1.1.18].
 
    
0.628
BAJ50423.1
2-dehydro-3-deoxygluconokinase.
 
  
 0.514
cas1
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
 
 0.469
BAJ50736.1
Ribokinase.
  
  
 0.405
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.405
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.