Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAJ50547.1Ornithine cyclodeaminase. (325 aa)    
Predicted Functional Partners:
BAJ51441.1
2-oxoisovalerate dehydrogenase E1 component, beta subunit.
   
 
  0.806
BAJ50112.1
Pyruvate dehydrogenase E1 component subunit alpha.
   
 
  0.803
BAJ51056.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
    
  0.803
BAJ51201.1
Pyruvate dehydrogenase E1 component subunit alpha.
   
 
  0.803
BAJ49932.1
Pyruvate ferredoxin oxidoreductase, beta subunit.
    
  0.800
BAJ49933.1
Pyruvate ferredoxin oxidoreductase, alpha subunit.
    
  0.800
BAJ49934.1
Pyruvate ferredoxin oxidoreductase, gamma subunit.
    
  0.800
BAJ50598.1
Pyruvate ferredoxin oxidoreductase, gamma subunit.
     
  0.800
BAJ50599.1
Pyruvate ferredoxin oxidoreductase, delta subunit.
    
  0.800
BAJ50600.1
Pyruvate ferredoxin oxidoreductase, alpha subunit.
    
  0.800
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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