Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50574.1Blue (type 1) copper domain protein; AhpC/TSA family. (144 aa)    
Predicted Functional Partners:
BAJ50573.1
Copper-containing oxidoreductase; Nitrite reductase (NO-forming) [EC:1.7.2.1].
 
 
 
 0.878
BAJ50575.1
Hypothetical protein.
       0.773
BAJ50572.1
HTH DNA binding domain protein.
       0.548
BAJ50571.1
ABC transporter ATP-binding protein.
 
    0.536
BAJ50456.1
Rieske (2Fe-2S) domain-containing protein.
  
 
 0.478
BAJ50570.1
ABC-2 type transport system permease.
  
    0.469
BAJ50569.1
Hypothetical protein.
       0.452
BAJ49929.1
Cytochrome b/b6 domain-containing protein.
 
 
 0.432
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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