STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50637.1Aconitate hydratase. (909 aa)    
Predicted Functional Partners:
BAJ50745.1
Citrate synthase.
  
 0.997
BAJ51498.1
Citrate synthase.
  
 0.997
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 0.986
BAJ50621.1
Isocitrate dehydrogenase.
  
 0.984
BAJ50895.1
Malate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.978
BAJ50994.1
Isocitrate lyase.
  
 
 0.962
BAJ50744.1
2-methylcitrate dehydratase.
  
 
 0.947
BAJ50042.1
3-hydroxybutyryl-CoA dehydratase.
  
 0.918
BAJ50625.1
Succinate dehydrogenase iron-sulfur protein.
  
 
 0.916
BAJ50622.1
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.884
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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