STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50653.1UDP-glucose 4-epimerase. (306 aa)    
Predicted Functional Partners:
BAJ50126.1
UDP-glucose 6-dehydrogenase.
 
 0.979
BAJ50125.1
UTP--glucose-1-phosphate uridylyltransferase.
 
 
 0.950
BAJ51350.1
Bifunctional protein GlmU.
 
 0.932
BAJ50048.1
UDP-glucose 4-epimerase.
  
  
 
0.916
BAJ50654.1
Glycosyl transferase family 1.
 
  
 0.898
BAJ50495.1
Nucleotidyl transferase.
  
 0.890
rps3ae
Small subunit ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.850
rps19p
Small subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.835
rps3
Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.829
rps28e
Small subunit ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
   
  0.820
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.