Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50800.1Conserved hypothetical protein. (290 aa)    
Predicted Functional Partners:
BAJ50799.1
Conserved hypothetical protein.
   
 
 0.892
BAJ50797.1
Exonuclease SbcC.
     
 0.816
BAJ50798.1
Metallophosphoesterase involved in DNA repair/DNA repair protein (rad32/mre11).
       0.793
BAJ50810.1
Hypothetical protein.
   
 
 0.545
BAJ50838.1
Conserved hypothetical protein.
   
 
 0.545
BAJ51369.1
Conserved hypothetical protein.
   
 
 0.545
BAJ50711.1
Conserved hypothetical protein.
   
 
 0.431
BAJ51434.1
Conserved hypothetical protein.
   
    0.416
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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