Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50837.1Hypothetical protein. (472 aa)    
Predicted Functional Partners:
BAJ50838.1
Conserved hypothetical protein.
   
 
 0.776
BAJ50840.1
DNA repair exonuclease.
     
 0.618
BAJ50839.1
DNA repair exonuclease.
       0.570
BAJ50836.1
Transcriptional regulator, HxlR family.
       0.568
BAJ50799.1
Conserved hypothetical protein.
   
 
 0.545
BAJ50810.1
Hypothetical protein.
   
 
 0.545
BAJ51369.1
Conserved hypothetical protein.
   
 
 0.545
BAJ50711.1
Conserved hypothetical protein.
   
 
 0.431
BAJ51434.1
Conserved hypothetical protein.
   
    0.416
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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