Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAJ50856.1Conserved hypothetical protein; CRISPR-associated protein. (861 aa)    
Predicted Functional Partners:
BAJ50855.1
CRISPR-associated RAMP family protein.
  
 
 0.951
BAJ50853.1
CRISPR-associated RAMP family protein.
  
 
 0.941
BAJ50858.1
CRISPR-associated RAMP family protein.
  
 
 0.941
BAJ50859.1
CRISPR-associated RAMP family protein.
  
 
 0.941
BAJ50854.1
Hypothetical protein.
     
 0.853
BAJ50857.1
Conserved hypothetical protein; CRISPR-associated RAMP family protein.
     
 0.845
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
     
 0.831
BAJ50860.1
Conserved hypothetical protein.
     
 0.819
BAJ50861.1
Hypothetical protein.
     
 0.595
BAJ50612.1
Hypothetical protein.
  
  
 0.529
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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