BAJ50862.1 protein (Caldiarchaeum subterraneum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BAJ50862.1

Hydrogenase maturation protein HypF. (80 aa)

Predicted Functional Partners:

BAJ50880.1

0.769

BAJ51061.1

0.769

BAJ50878.1

0.660

BAJ50869.1

0.566

BAJ50879.1

0.563

thiE

0.550

BAJ50875.1

0.534

BAJ50864.1

0.473

Your Current Organism:

Caldiarchaeum subterraneum

NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAJ50862.1	BAJ50864.1	CSUB_C1009	CSUB_C1011	Hydrogenase maturation protein HypF.	Thiamine biosynthesis protein ThiG.	0.473
BAJ50862.1	BAJ50869.1	CSUB_C1009	CSUB_C1017	Hydrogenase maturation protein HypF.	Hydrogenase nickel incorporation protein HypA.	0.566
BAJ50862.1	BAJ50875.1	CSUB_C1009	CSUB_C1023	Hydrogenase maturation protein HypF.	Nickel-dependent hydrogenase large subunit.	0.534
BAJ50862.1	BAJ50878.1	CSUB_C1009	CSUB_C1026	Hydrogenase maturation protein HypF.	Hydrogenase expression/formation protein HypD.	0.660
BAJ50862.1	BAJ50879.1	CSUB_C1009	CSUB_C1027	Hydrogenase maturation protein HypF.	Hydrogenase expression/formation protein HypC.	0.563
BAJ50862.1	BAJ50880.1	CSUB_C1009	CSUB_C1028	Hydrogenase maturation protein HypF.	Hydrogenase expression/formation protein HypE.	0.769
BAJ50862.1	BAJ51061.1	CSUB_C1009	CSUB_C1210	Hydrogenase maturation protein HypF.	Hydrogenase expression/formation protein HypE.	0.769
BAJ50862.1	thiE	CSUB_C1009	CSUB_C1010	Hydrogenase maturation protein HypF.	Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).	0.550
BAJ50864.1	BAJ50862.1	CSUB_C1011	CSUB_C1009	Thiamine biosynthesis protein ThiG.	Hydrogenase maturation protein HypF.	0.473
BAJ50864.1	thiE	CSUB_C1011	CSUB_C1010	Thiamine biosynthesis protein ThiG.	Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).	0.801
BAJ50869.1	BAJ50862.1	CSUB_C1017	CSUB_C1009	Hydrogenase nickel incorporation protein HypA.	Hydrogenase maturation protein HypF.	0.566
BAJ50869.1	BAJ50875.1	CSUB_C1017	CSUB_C1023	Hydrogenase nickel incorporation protein HypA.	Nickel-dependent hydrogenase large subunit.	0.972
BAJ50869.1	BAJ50878.1	CSUB_C1017	CSUB_C1026	Hydrogenase nickel incorporation protein HypA.	Hydrogenase expression/formation protein HypD.	0.921
BAJ50869.1	BAJ50879.1	CSUB_C1017	CSUB_C1027	Hydrogenase nickel incorporation protein HypA.	Hydrogenase expression/formation protein HypC.	0.863
BAJ50869.1	BAJ50880.1	CSUB_C1017	CSUB_C1028	Hydrogenase nickel incorporation protein HypA.	Hydrogenase expression/formation protein HypE.	0.601
BAJ50869.1	BAJ51061.1	CSUB_C1017	CSUB_C1210	Hydrogenase nickel incorporation protein HypA.	Hydrogenase expression/formation protein HypE.	0.601
BAJ50875.1	BAJ50862.1	CSUB_C1023	CSUB_C1009	Nickel-dependent hydrogenase large subunit.	Hydrogenase maturation protein HypF.	0.534
BAJ50875.1	BAJ50869.1	CSUB_C1023	CSUB_C1017	Nickel-dependent hydrogenase large subunit.	Hydrogenase nickel incorporation protein HypA.	0.972
BAJ50875.1	BAJ50878.1	CSUB_C1023	CSUB_C1026	Nickel-dependent hydrogenase large subunit.	Hydrogenase expression/formation protein HypD.	0.703
BAJ50875.1	BAJ50879.1	CSUB_C1023	CSUB_C1027	Nickel-dependent hydrogenase large subunit.	Hydrogenase expression/formation protein HypC.	0.633