BAJ50870.1 protein (Caldiarchaeum subterraneum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BAJ50870.1

ATP-binding protein involved in chromosome partitioning. (254 aa)

Predicted Functional Partners:

BAJ50869.1

0.968

BAJ51336.1

0.790

BAJ51362.1

0.728

BAJ50876.1

0.718

BAJ51361.1

0.715

BAJ50297.1

0.700

BAJ51360.1

0.642

BAJ51183.1

0.639

BAJ50873.1

0.626

BAJ50875.1

0.620

Your Current Organism:

Caldiarchaeum subterraneum

NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAJ50297.1	BAJ50870.1	CSUB_C0436	CSUB_C1018	Conserved hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA).	ATP-binding protein involved in chromosome partitioning.	0.700
BAJ50869.1	BAJ50870.1	CSUB_C1017	CSUB_C1018	Hydrogenase nickel incorporation protein HypA.	ATP-binding protein involved in chromosome partitioning.	0.968
BAJ50869.1	BAJ50873.1	CSUB_C1017	CSUB_C1021	Hydrogenase nickel incorporation protein HypA.	Oxidoreductase FAD/NAD(P)-binding subunit.	0.696
BAJ50869.1	BAJ50875.1	CSUB_C1017	CSUB_C1023	Hydrogenase nickel incorporation protein HypA.	Nickel-dependent hydrogenase large subunit.	0.972
BAJ50869.1	BAJ50876.1	CSUB_C1017	CSUB_C1024	Hydrogenase nickel incorporation protein HypA.	Hydrogenase maturation protease.	0.915
BAJ50870.1	BAJ50297.1	CSUB_C1018	CSUB_C0436	ATP-binding protein involved in chromosome partitioning.	Conserved hypothetical protein; Catalyzes the GTP-dependent phosphorylation of the 3'- hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA).	0.700
BAJ50870.1	BAJ50869.1	CSUB_C1018	CSUB_C1017	ATP-binding protein involved in chromosome partitioning.	Hydrogenase nickel incorporation protein HypA.	0.968
BAJ50870.1	BAJ50873.1	CSUB_C1018	CSUB_C1021	ATP-binding protein involved in chromosome partitioning.	Oxidoreductase FAD/NAD(P)-binding subunit.	0.626
BAJ50870.1	BAJ50875.1	CSUB_C1018	CSUB_C1023	ATP-binding protein involved in chromosome partitioning.	Nickel-dependent hydrogenase large subunit.	0.620
BAJ50870.1	BAJ50876.1	CSUB_C1018	CSUB_C1024	ATP-binding protein involved in chromosome partitioning.	Hydrogenase maturation protease.	0.718
BAJ50870.1	BAJ51183.1	CSUB_C1018	CSUB_C1332	ATP-binding protein involved in chromosome partitioning.	Heat shock protein DnaJ-like.	0.639
BAJ50870.1	BAJ51336.1	CSUB_C1018	CSUB_C1485	ATP-binding protein involved in chromosome partitioning.	Hypothetical protein.	0.790
BAJ50870.1	BAJ51360.1	CSUB_C1018	CSUB_C1509	ATP-binding protein involved in chromosome partitioning.	NADH dehydrogenase I subunit B; Belongs to the complex I 20 kDa subunit family.	0.642
BAJ50870.1	BAJ51361.1	CSUB_C1018	CSUB_C1510	ATP-binding protein involved in chromosome partitioning.	NADH dehydrogenase I subunit C.	0.715
BAJ50870.1	BAJ51362.1	CSUB_C1018	CSUB_C1511	ATP-binding protein involved in chromosome partitioning.	NADH dehydrogenase I subunit D; Belongs to the complex I 49 kDa subunit family.	0.728
BAJ50873.1	BAJ50869.1	CSUB_C1021	CSUB_C1017	Oxidoreductase FAD/NAD(P)-binding subunit.	Hydrogenase nickel incorporation protein HypA.	0.696
BAJ50873.1	BAJ50870.1	CSUB_C1021	CSUB_C1018	Oxidoreductase FAD/NAD(P)-binding subunit.	ATP-binding protein involved in chromosome partitioning.	0.626
BAJ50873.1	BAJ50875.1	CSUB_C1021	CSUB_C1023	Oxidoreductase FAD/NAD(P)-binding subunit.	Nickel-dependent hydrogenase large subunit.	0.960
BAJ50873.1	BAJ50876.1	CSUB_C1021	CSUB_C1024	Oxidoreductase FAD/NAD(P)-binding subunit.	Hydrogenase maturation protease.	0.873
BAJ50873.1	BAJ51336.1	CSUB_C1021	CSUB_C1485	Oxidoreductase FAD/NAD(P)-binding subunit.	Hypothetical protein.	0.423