STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ50963.1Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase. (459 aa)    
Predicted Functional Partners:
BAJ50962.1
Hypothetical protein.
       0.773
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.751
BAJ50033.1
Conserved hypothetical protein.
  
  
 0.712
BAJ50992.1
Conserved hypothetical protein.
  
  
 0.712
BAJ51138.1
Hypothetical protein.
  
  
 0.712
BAJ51572.1
Conserved hypothetical protein.
  
  
 0.712
BAJ50451.1
Conserved hypothetical protein.
       0.700
BAJ51262.1
Archaeal histone.
       0.700
BAJ50961.1
Glycosyl transferase family 2.
 
   
 0.653
BAJ50960.1
Hypothetical protein.
       0.547
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.