Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAJ51029.1Fe-S oxidoreductase. (573 aa)    
Predicted Functional Partners:
BAJ50033.1
Conserved hypothetical protein.
  
  
 0.712
BAJ50992.1
Conserved hypothetical protein.
  
  
 0.712
BAJ51138.1
Hypothetical protein.
  
  
 0.712
BAJ51572.1
Conserved hypothetical protein.
  
  
 0.712
adkA
Adenylate kinase; Belongs to the archaeal adenylate kinase family.
  
     0.601
nep1
Ribosome biogenesis protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.
  
     0.585
BAJ51030.1
Phage shock protein C, PspC.
       0.553
albA
Archaea-specific DNA-binding protein AlbA; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
     0.540
BAJ50771.1
Fe-S oxidoreductase; Radical SAM superfamily.
 
   
 0.486
BAJ51353.1
Riboflavin kinase, archaea type.
 
     0.430
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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