STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51057.1Fe-S oxidoreductase. (669 aa)    
Predicted Functional Partners:
BAJ51222.1
Conserved hypothetical protein.
 
 
 0.984
BAJ51058.1
Electron transfer flavoprotein beta subunit.
 
  
 0.942
BAJ51059.1
Electron transfer flavoprotein alpha subunit.
 
  
 0.864
BAJ51061.1
Hydrogenase expression/formation protein HypE.
     
 0.809
BAJ50932.1
Glycolate oxidase.
 
  
 0.794
BAJ51060.1
Hypothetical protein.
       0.752
BAJ50873.1
Oxidoreductase FAD/NAD(P)-binding subunit.
  
  
 0.744
BAJ50622.1
Succinate dehydrogenase flavoprotein subunit.
  
  
 0.738
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.681
BAJ50876.1
Hydrogenase maturation protease.
 
   
 0.639
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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