Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51250.1Fe-S cluster assembly protein SufB. (471 aa)    
Predicted Functional Partners:
BAJ51143.1
Fe-S cluster assembly ATP-binding protein SufC.
 
 0.993
BAJ50005.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.940
BAJ49985.1
Nitrogen fixation protein NifU.
  
  
 0.864
BAJ51231.1
Ferredoxin.
       0.846
BAJ49956.1
Fe-S cluster assembly protein SufB.
 
    
0.793
BAJ51249.1
NUDIX hydrolase.
       0.773
BAJ51251.1
Hypothetical protein.
       0.565
BAJ50177.1
Iron-sulfur cluster assembly accessory protein.
  
 
 0.483
BAJ51252.1
Conserved hypothetical protein.
       0.404
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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