Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51257.1Lhr and Lhr-like helicase [EC:3.6.1.-]. (951 aa)    
Predicted Functional Partners:
BAJ51121.1
Metallophosphoesterase.
 
    0.873
BAJ51258.1
Hypothetical protein.
       0.773
BAJ51408.1
DNA ligase 1; Belongs to the ATP-dependent DNA ligase family.
 
    0.666
BAJ51259.1
butyryl-CoA dehydrogenase (EC:1.3.99.2).
       0.608
BAJ51281.1
Hypothetical protein.
       0.565
BAJ50980.1
Conserved hypothetical protein.
 
    0.557
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
    0.549
BAJ51588.1
Transcriptional regulator.
  
     0.528
BAJ51042.1
FdhD/NarQ family/nitrate assimilation protein.
       0.525
BAJ51261.1
Thermosome beta subunit; Belongs to the TCP-1 chaperonin family.
 
 
   0.525
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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