BAJ51317.1 protein (Caldiarchaeum subterraneum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BAJ51317.1

Signal-transduction protein. (132 aa)

Predicted Functional Partners:

BAJ51318.1

0.731

BAJ51319.1

0.723

rps15

0.578

BAJ50184.1

0.545

BAJ50166.1

0.537

rps7

0.535

rps4

0.529

BAJ51320.1

0.528

rps13

0.527

rpl15

0.524

Your Current Organism:

Caldiarchaeum subterraneum

NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAJ50166.1	BAJ50184.1	CSUB_C0305	CSUB_C0323	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.995
BAJ50166.1	BAJ51317.1	CSUB_C0305	CSUB_C1466	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Signal-transduction protein.	0.537
BAJ50166.1	rpl15	CSUB_C0305	CSUB_C0480	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.998
BAJ50166.1	rps13	CSUB_C0305	CSUB_C0458	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.	0.995
BAJ50166.1	rps15	CSUB_C0305	CSUB_C0444	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S15.	0.995
BAJ50166.1	rps4	CSUB_C0305	CSUB_C1609	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.991
BAJ50166.1	rps7	CSUB_C0305	CSUB_C1705	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.995
BAJ50184.1	BAJ50166.1	CSUB_C0323	CSUB_C0305	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.995
BAJ50184.1	BAJ51317.1	CSUB_C0323	CSUB_C1466	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Signal-transduction protein.	0.545
BAJ50184.1	BAJ51320.1	CSUB_C0323	CSUB_C1469	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Conserved hypothetical protein; 3-oxoacyl-[acyl-carrier-protein (ACP); Belongs to the thiolase-like superfamily. UPF0219 family.	0.472
BAJ50184.1	rpl15	CSUB_C0323	CSUB_C0480	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Large subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.991
BAJ50184.1	rps13	CSUB_C0323	CSUB_C0458	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family.	0.999
BAJ50184.1	rps15	CSUB_C0323	CSUB_C0444	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S15.	0.999
BAJ50184.1	rps4	CSUB_C0323	CSUB_C1609	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
BAJ50184.1	rps7	CSUB_C0323	CSUB_C1705	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.	0.998
BAJ51317.1	BAJ50166.1	CSUB_C1466	CSUB_C0305	Signal-transduction protein.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.537
BAJ51317.1	BAJ50184.1	CSUB_C1466	CSUB_C0323	Signal-transduction protein.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.545
BAJ51317.1	BAJ51318.1	CSUB_C1466	CSUB_C1467	Signal-transduction protein.	4-nitrophenyl phosphatase.	0.731
BAJ51317.1	BAJ51319.1	CSUB_C1466	CSUB_C1468	Signal-transduction protein.	Transcriptional regulator, lrp family.	0.723
BAJ51317.1	BAJ51320.1	CSUB_C1466	CSUB_C1469	Signal-transduction protein.	Conserved hypothetical protein; 3-oxoacyl-[acyl-carrier-protein (ACP); Belongs to the thiolase-like superfamily. UPF0219 family.	0.528