Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51348.1Acetoin utilization protein AcuC; Histone deacetylase superfamily protein. (317 aa)    
Predicted Functional Partners:
BAJ49902.1
Hypothetical protein.
   
 0.932
BAJ50608.1
DNA/RNA helicase.
  
 0.861
BAJ49895.1
Helicase domain-containing protein; SNF2/Rad54 family.
  
 0.858
BAJ49944.1
AAA family ATPase.
   
 0.853
BAJ50658.1
AAA family ATPase.
   
 0.853
BAJ51253.1
AAA family ATPase.
   
 0.853
dnaK
Molecular chaperone DnaK; Acts as a chaperone.
    
 
 0.835
tbp
Transcription initiation factor TFIID TATA-box-binding protein; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
  
 0.834
BAJ51183.1
Heat shock protein DnaJ-like.
  
 0.833
BAJ50939.1
Large subunit ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
  0.826
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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