Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51349.1Conserved hypothetical protein; Belongs to the UPF0215 family. (210 aa)    
Predicted Functional Partners:
BAJ51348.1
Acetoin utilization protein AcuC; Histone deacetylase superfamily protein.
       0.774
csl4
Exosome complex component CSL4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.
 
     0.735
BAJ50277.1
DNA-directed RNA polymerase subunit L.
       0.700
BAJ51140.1
Conserved hypothetical protein.
       0.700
BAJ51346.1
Conserved hypothetical protein.
       0.559
dbh
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis.
       0.559
BAJ50323.1
Phosphate uptake regulator.
 
     0.544
BAJ50993.1
Phosphate uptake regulator.
 
     0.543
BAJ50516.1
Hypothetical protein.
 
     0.537
BAJ50306.1
Archaea-specific RecJ-like exonuclease.
 
     0.516
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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