STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psmB-3Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. (201 aa)    
Predicted Functional Partners:
psmB
Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
  
 
0.906
psmB-2
20S proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
  
 
0.905
BAJ51000.1
20S proteasome alpha subunit.
 
 
0.850
BAJ51426.1
Proteasome alpha subunit.
 
 
0.849
BAJ51324.1
26S proteasome regulatory subunit N11-like protein.
  
 0.733
rpl7ae
Large subunit ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
 
 
 0.727
BAJ49998.1
Thermosome subunit alpha; Belongs to the TCP-1 chaperonin family.
 
 
 0.687
rpl4
Large subunit ribosomal protein L4e; Forms part of the polypeptide exit tunnel.
 
 
   0.685
BAJ50531.1
Thermosome alpha subunit; Belongs to the TCP-1 chaperonin family.
 
 
 0.682
BAJ51261.1
Thermosome beta subunit; Belongs to the TCP-1 chaperonin family.
 
 
 0.680
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.