Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAJ51378.1Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (141 aa)    
Predicted Functional Partners:
BAJ50622.1
Succinate dehydrogenase flavoprotein subunit.
  
 
 0.829
BAJ51058.1
Electron transfer flavoprotein beta subunit.
   
 
 0.786
BAJ51379.1
Conserved hypothetical protein.
       0.658
BAJ50598.1
Pyruvate ferredoxin oxidoreductase, gamma subunit.
  
  
 0.545
BAJ51377.1
Conserved hypothetical protein.
       0.486
cca
tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
     
 0.463
BAJ51376.1
Coenzyme F420-dependent hydrogenase beta subunit.
       0.419
BAJ51380.1
Conserved hypothetical protein.
       0.408
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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