STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51398.1DtxR family iron dependent repressor. (168 aa)    
Predicted Functional Partners:
BAJ51397.1
Conserved hypothetical protein.
       0.646
BAJ51399.1
2-isopropylmalate synthase.
       0.584
BAJ51549.1
ABC transporter ATP-binding protein.
 
  
 0.575
BAJ51396.1
Transcriptional regulator, MarR family.
  
    0.554
BAJ51176.1
Zinc ABC transporter permease.
  
  
 0.497
BAJ51548.1
Manganese/iron ABC transporter permease.
  
  
 0.497
BAJ51021.1
Signal peptidase, type I.
   
    0.489
BAJ51178.1
Hypothetical protein.
  
  
 0.487
BAJ51550.1
Manganese/iron ABC transporter substrate-binding protein.
  
  
 0.487
BAJ51179.1
Metal dependent repressor, DtxR family.
 
   
 0.476
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.