Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAJ51461.1Geranylgeranyl reductase. (379 aa)    
Predicted Functional Partners:
BAJ50207.1
4-hydroxybenzoate octaprenyltransferase.
 
 
 0.971
carS
Conserved hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
     
 0.925
BAJ51200.1
Dehydrogenase (flavoprotein)-like protein.
  
  
 
0.922
BAJ51284.1
Electron transfer flavoprotein-quinone oxidoreductase.
 
 
 0.772
BAJ51058.1
Electron transfer flavoprotein beta subunit.
  
 
 0.700
BAJ50034.1
4-hydroxybenzoate octaprenyltransferase.
 
  
 0.574
rps4
Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
 0.558
BAJ50443.1
Phytoene synthase.
 
  
 0.509
BAJ51456.1
Conserved hypothetical protein; Metallo-beta-lactamase superfamily.
 
     0.489
BAJ50272.1
DEAD/DEAH box helicase domain protein.
 
    0.471
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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