STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSlysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family. (542 aa)    
Predicted Functional Partners:
BAJ51070.1
Elongator complex protein 3.
       0.846
BAJ51379.1
Conserved hypothetical protein.
 
      0.835
BAJ51472.1
Replication factor A1.
  
    0.794
BAJ50716.1
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.700
BAJ51597.1
Conserved hypothetical protein.
       0.700
BAJ51470.1
SAM-dependent methyltransferase.
       0.686
BAJ51040.1
Metalloprotease.
       0.612
BAJ51469.1
Conserved hypothetical protein; D-aminoacyl-tRNA deacylase domain; Belongs to the DtdA deacylase family.
 
     0.591
BAJ50017.1
Hypothetical protein.
   
    0.575
BAJ50727.1
methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
   
 0.477
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.