Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51491.1Conserved hypothetical protein. (117 aa)    
Predicted Functional Partners:
BAJ51143.1
Fe-S cluster assembly ATP-binding protein SufC.
  
 0.916
BAJ50005.1
Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.886
BAJ49985.1
Nitrogen fixation protein NifU.
  
  
 0.861
BAJ49956.1
Fe-S cluster assembly protein SufB.
    
 0.807
BAJ49959.1
Conserved hypothetical protein; MaoC domain protein dehydratase.
  
  
 0.752
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.700
BAJ51492.1
Valyl tRNA-synthetase.
       0.663
BAJ51493.1
Conserved hypothetical protein.
       0.655
BAJ51490.1
Protease I.
  
    0.590
BAJ50109.1
phenylacetate-CoA ligase.
     
 0.468
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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