BAJ51509.1 protein (Caldiarchaeum subterraneum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BAJ51509.1

CBS-domain-containing protein. (196 aa)

Predicted Functional Partners:

BAJ51510.1

0.827

BAJ51512.1

0.807

BAJ51508.1

0.789

BAJ51511.1

0.786

BAJ51513.1

0.629

BAJ51507.1

0.556

rps19p

0.546

BAJ50184.1

0.545

BAJ50166.1

0.537

rps4

0.529

Your Current Organism:

Caldiarchaeum subterraneum

NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAJ50166.1	BAJ50184.1	CSUB_C0305	CSUB_C0323	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.995
BAJ50166.1	BAJ51508.1	CSUB_C0305	CSUB_C1657	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Conserved hypothetical protein; Fibronectin-binding protein A, N-terminal.	0.928
BAJ50166.1	BAJ51509.1	CSUB_C0305	CSUB_C1658	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	CBS-domain-containing protein.	0.537
BAJ50166.1	rps19p	CSUB_C0305	CSUB_C0300	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.997
BAJ50166.1	rps4	CSUB_C0305	CSUB_C1609	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.991
BAJ50184.1	BAJ50166.1	CSUB_C0323	CSUB_C0305	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.995
BAJ50184.1	BAJ51509.1	CSUB_C0323	CSUB_C1658	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	CBS-domain-containing protein.	0.545
BAJ50184.1	rps19p	CSUB_C0323	CSUB_C0300	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.998
BAJ50184.1	rps4	CSUB_C0323	CSUB_C1609	Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	Small subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
BAJ51507.1	BAJ51508.1	CSUB_C1656	CSUB_C1657	Hypothetical protein.	Conserved hypothetical protein; Fibronectin-binding protein A, N-terminal.	0.556
BAJ51507.1	BAJ51509.1	CSUB_C1656	CSUB_C1658	Hypothetical protein.	CBS-domain-containing protein.	0.556
BAJ51507.1	BAJ51510.1	CSUB_C1656	CSUB_C1659	Hypothetical protein.	Conserved hypothetical protein.	0.556
BAJ51507.1	BAJ51511.1	CSUB_C1656	CSUB_C1660	Hypothetical protein.	Conserved hypothetical protein.	0.556
BAJ51507.1	BAJ51512.1	CSUB_C1656	CSUB_C1661	Hypothetical protein.	Glycosyltransferase family 28.	0.556
BAJ51507.1	BAJ51513.1	CSUB_C1656	CSUB_C1662	Hypothetical protein.	Conserved hypothetical protein.	0.451
BAJ51508.1	BAJ50166.1	CSUB_C1657	CSUB_C0305	Conserved hypothetical protein; Fibronectin-binding protein A, N-terminal.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.928
BAJ51508.1	BAJ51507.1	CSUB_C1657	CSUB_C1656	Conserved hypothetical protein; Fibronectin-binding protein A, N-terminal.	Hypothetical protein.	0.556
BAJ51508.1	BAJ51509.1	CSUB_C1657	CSUB_C1658	Conserved hypothetical protein; Fibronectin-binding protein A, N-terminal.	CBS-domain-containing protein.	0.789
BAJ51508.1	BAJ51510.1	CSUB_C1657	CSUB_C1659	Conserved hypothetical protein; Fibronectin-binding protein A, N-terminal.	Conserved hypothetical protein.	0.860
BAJ51508.1	BAJ51511.1	CSUB_C1657	CSUB_C1660	Conserved hypothetical protein; Fibronectin-binding protein A, N-terminal.	Conserved hypothetical protein.	0.860