Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BAJ51548.1Manganese/iron ABC transporter permease. (277 aa)    
Predicted Functional Partners:
BAJ51550.1
Manganese/iron ABC transporter substrate-binding protein.
  
 0.998
BAJ51549.1
ABC transporter ATP-binding protein.
 
 0.996
BAJ51177.1
Zinc ABC transporter ATP-binding protein.
 
 
 0.951
BAJ51178.1
Hypothetical protein.
 
  
 0.924
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
  
    0.635
BAJ51176.1
Zinc ABC transporter permease.
  
  
 
0.496
BAJ51398.1
DtxR family iron dependent repressor.
  
  
 0.466
BAJ51179.1
Metal dependent repressor, DtxR family.
  
  
 0.441
BAJ50244.1
Cobalt/nickel ABC transporter ATP-binding protein.
    
 0.401
BAJ50245.1
Cobalt/nickel ABC transporter ATP-binding protein.
    
 0.401
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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