STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51549.1ABC transporter ATP-binding protein. (251 aa)    
Predicted Functional Partners:
BAJ51548.1
Manganese/iron ABC transporter permease.
 
 0.994
BAJ51550.1
Manganese/iron ABC transporter substrate-binding protein.
 
  
 0.986
BAJ51176.1
Zinc ABC transporter permease.
 
 
 0.933
BAJ51435.1
Cobalt/nickel ABC transporter ATP-binding protein.
   
0.903
BAJ51178.1
Hypothetical protein.
 
  
 0.899
BAJ50355.1
Peptide/nickel ABC transporter ATP-binding protein.
    
0.898
BAJ51134.1
Peptide/nickel ABC transporter ATP-binding protein.
    
0.898
BAJ50435.1
Branched-chain amino acid ABC transporter ATP-binding protein.
 
    
0.636
BAJ50497.1
Iron complex ABC transporter permease.
   
 0.609
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
       0.598
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
Server load: medium (48%) [HD]