Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51558.1Simple sugar ABC transporter permease. (324 aa)    
Predicted Functional Partners:
BAJ51559.1
Simple sugar transporter permease.
 
 0.996
BAJ51560.1
Simple sugar transporter ATP-binding protein.
 
 
 0.984
BAJ51561.1
Simple sugar ABC transporter substrate-binding protein.
 
 
 0.983
BAJ50733.1
ABC transporter permease.
 
0.971
BAJ50391.1
Conserved hypothetical protein.
 
 
 0.958
BAJ50392.1
Basic membrane lipoprotein.
 
 
 0.956
BAJ50389.1
Sugar ABC transporter permease.
 
0.953
BAJ50743.1
Simple sugar ABC transporter ATP-binding protein.
 
 0.937
BAJ50388.1
Sugar ABC transporter ATP-binding protein.
 
 0.935
BAJ50732.1
Simple sugar transporter permease.
  
  
 
0.918
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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