Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAJ51595.1Hypothetical protein. (142 aa)    
Predicted Functional Partners:
BAJ51596.1
Carbon monoxide dehydrogenase large subunit.
       0.727
BAJ51597.1
Conserved hypothetical protein.
       0.707
BAJ50588.1
Deoxyribonuclease V.
       0.700
BAJ51353.1
Riboflavin kinase, archaea type.
       0.700
BAJ51535.1
Conserved hypothetical protein.
       0.534
BAJ51598.1
MazG nucleotide pyrophosphohydrolase.
       0.515
BAJ50029.1
Ribose 5-phosphate isomerase A.
   
    0.486
Your Current Organism:
Caldiarchaeum subterraneum
NCBI taxonomy Id: 311458
Other names: C. Caldiarchaeum subterraneum, Candidatus Caldiarchaeum subterraneum, uncultured crenarchaeote 10-H-08
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