I7MI70_TETTS protein (Tetrahymena thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I7MI70_TETTS

RNA recognition motif protein. (842 aa)

Predicted Functional Partners:

Q23K34_TETTS

0.765

I7M6K8_TETTS

0.635

W7X164_TETTS

0.599

I7MB64_TETTS

0.582

I7M7J6_TETTS

0.567

I7ME31_TETTS

0.566

W7XDW4_TETTS

0.559

I7LWZ3_TETTS

0.556

Q232H6_TETTS

0.548

I7MGY6_TETTS

0.547

Your Current Organism:

Tetrahymena thermophila

NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I7LWZ3_TETTS	I7M6K8_TETTS	I7LWZ3	I7M6K8	RNA polymerase Rpb7, amine-terminal domain protein.	Nuclear cap-binding protein subunit 2.	0.843
I7LWZ3_TETTS	I7MB64_TETTS	I7LWZ3	I7MB64	RNA polymerase Rpb7, amine-terminal domain protein.	RNA-binding motif protein.	0.758
I7LWZ3_TETTS	I7ME31_TETTS	I7LWZ3	I7ME31	RNA polymerase Rpb7, amine-terminal domain protein.	DNA-directed RNA polymerase II subunit.	0.999
I7LWZ3_TETTS	I7MGY6_TETTS	I7LWZ3	I7MGY6	RNA polymerase Rpb7, amine-terminal domain protein.	RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP protein.	0.568
I7LWZ3_TETTS	I7MI70_TETTS	I7LWZ3	I7MI70	RNA polymerase Rpb7, amine-terminal domain protein.	RNA recognition motif protein.	0.556
I7LWZ3_TETTS	Q232H6_TETTS	I7LWZ3	Q232H6	RNA polymerase Rpb7, amine-terminal domain protein.	U1 small nuclear ribonucleoprotein 70 kDa protein.	0.798
I7LWZ3_TETTS	Q23K34_TETTS	I7LWZ3	Q23K34	RNA polymerase Rpb7, amine-terminal domain protein.	RNA recognition motif protein.	0.710
I7LWZ3_TETTS	W7XDW4_TETTS	I7LWZ3	W7XDW4	RNA polymerase Rpb7, amine-terminal domain protein.	F-box protein, putative.	0.999
I7M6K8_TETTS	I7LWZ3_TETTS	I7M6K8	I7LWZ3	Nuclear cap-binding protein subunit 2.	RNA polymerase Rpb7, amine-terminal domain protein.	0.843
I7M6K8_TETTS	I7M7J6_TETTS	I7M6K8	I7M7J6	Nuclear cap-binding protein subunit 2.	MIF4G domain protein.	0.999
I7M6K8_TETTS	I7MB64_TETTS	I7M6K8	I7MB64	Nuclear cap-binding protein subunit 2.	RNA-binding motif protein.	0.797
I7M6K8_TETTS	I7ME31_TETTS	I7M6K8	I7ME31	Nuclear cap-binding protein subunit 2.	DNA-directed RNA polymerase II subunit.	0.839
I7M6K8_TETTS	I7MGY6_TETTS	I7M6K8	I7MGY6	Nuclear cap-binding protein subunit 2.	RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP protein.	0.727
I7M6K8_TETTS	I7MI70_TETTS	I7M6K8	I7MI70	Nuclear cap-binding protein subunit 2.	RNA recognition motif protein.	0.635
I7M6K8_TETTS	Q232H6_TETTS	I7M6K8	Q232H6	Nuclear cap-binding protein subunit 2.	U1 small nuclear ribonucleoprotein 70 kDa protein.	0.993
I7M6K8_TETTS	Q23K34_TETTS	I7M6K8	Q23K34	Nuclear cap-binding protein subunit 2.	RNA recognition motif protein.	0.794
I7M6K8_TETTS	W7X164_TETTS	I7M6K8	W7X164	Nuclear cap-binding protein subunit 2.	RNA recognition motif protein.	0.841
I7M6K8_TETTS	W7XDW4_TETTS	I7M6K8	W7XDW4	Nuclear cap-binding protein subunit 2.	F-box protein, putative.	0.866
I7M7J6_TETTS	I7M6K8_TETTS	I7M7J6	I7M6K8	MIF4G domain protein.	Nuclear cap-binding protein subunit 2.	0.999
I7M7J6_TETTS	I7MB64_TETTS	I7M7J6	I7MB64	MIF4G domain protein.	RNA-binding motif protein.	0.727