Q23FD8_TETTS protein (Tetrahymena thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Q23FD8_TETTS

Scavenger mRNA decapping enzyme carboxy-term-binding protein. (276 aa)

Predicted Functional Partners:

Q22HE6_TETTS

0.946

I7MI26_TETTS

0.915

Q22V65_TETTS

0.553

Q237D3_TETTS

0.553

I7M8B2_TETTS

0.523

Q226L2_TETTS

0.470

Q22C11_TETTS

0.470

Q23VC4_TETTS

0.470

I7M6R9_TETTS

0.457

Q22DC8_TETTS

0.447

Your Current Organism:

Tetrahymena thermophila

NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I7M6R9_TETTS	I7M8B2_TETTS	I7M6R9	I7M8B2	DNA-directed RNA polymerase subunit K.	RNA polymerase I-specific transcription initiation factor RRN3.	0.997
I7M6R9_TETTS	Q226L2_TETTS	I7M6R9	Q226L2	DNA-directed RNA polymerase subunit K.	Kinase domain protein.	0.780
I7M6R9_TETTS	Q22C11_TETTS	I7M6R9	Q22C11	DNA-directed RNA polymerase subunit K.	Cyclin-dependent kinase-like protein.	0.780
I7M6R9_TETTS	Q22DC8_TETTS	I7M6R9	Q22DC8	DNA-directed RNA polymerase subunit K.	Rpb7p/Rpc25p/MJ0397 family SHS2 protein.	0.999
I7M6R9_TETTS	Q22HE6_TETTS	I7M6R9	Q22HE6	DNA-directed RNA polymerase subunit K.	Bis(5'-adenosyl)-triphosphatase.	0.457
I7M6R9_TETTS	Q22V65_TETTS	I7M6R9	Q22V65	DNA-directed RNA polymerase subunit K.	TATA box-binding protein (TBP): present in archaea and protein.	0.969
I7M6R9_TETTS	Q237D3_TETTS	I7M6R9	Q237D3	DNA-directed RNA polymerase subunit K.	TATA box-binding protein (TBP): present in archaea and protein.	0.969
I7M6R9_TETTS	Q23FD8_TETTS	I7M6R9	Q23FD8	DNA-directed RNA polymerase subunit K.	Scavenger mRNA decapping enzyme carboxy-term-binding protein.	0.457
I7M6R9_TETTS	Q23VC4_TETTS	I7M6R9	Q23VC4	DNA-directed RNA polymerase subunit K.	Kinase domain protein.	0.780
I7M8B2_TETTS	I7M6R9_TETTS	I7M8B2	I7M6R9	RNA polymerase I-specific transcription initiation factor RRN3.	DNA-directed RNA polymerase subunit K.	0.997
I7M8B2_TETTS	Q22DC8_TETTS	I7M8B2	Q22DC8	RNA polymerase I-specific transcription initiation factor RRN3.	Rpb7p/Rpc25p/MJ0397 family SHS2 protein.	0.999
I7M8B2_TETTS	Q22HE6_TETTS	I7M8B2	Q22HE6	RNA polymerase I-specific transcription initiation factor RRN3.	Bis(5'-adenosyl)-triphosphatase.	0.523
I7M8B2_TETTS	Q22V65_TETTS	I7M8B2	Q22V65	RNA polymerase I-specific transcription initiation factor RRN3.	TATA box-binding protein (TBP): present in archaea and protein.	0.837
I7M8B2_TETTS	Q237D3_TETTS	I7M8B2	Q237D3	RNA polymerase I-specific transcription initiation factor RRN3.	TATA box-binding protein (TBP): present in archaea and protein.	0.837
I7M8B2_TETTS	Q23FD8_TETTS	I7M8B2	Q23FD8	RNA polymerase I-specific transcription initiation factor RRN3.	Scavenger mRNA decapping enzyme carboxy-term-binding protein.	0.523
I7MI26_TETTS	Q22HE6_TETTS	I7MI26	Q22HE6	ATP adenylyltransferase.	Bis(5'-adenosyl)-triphosphatase.	0.915
I7MI26_TETTS	Q23FD8_TETTS	I7MI26	Q23FD8	ATP adenylyltransferase.	Scavenger mRNA decapping enzyme carboxy-term-binding protein.	0.915
Q226L2_TETTS	I7M6R9_TETTS	Q226L2	I7M6R9	Kinase domain protein.	DNA-directed RNA polymerase subunit K.	0.780
Q226L2_TETTS	Q22HE6_TETTS	Q226L2	Q22HE6	Kinase domain protein.	Bis(5'-adenosyl)-triphosphatase.	0.470
Q226L2_TETTS	Q22V65_TETTS	Q226L2	Q22V65	Kinase domain protein.	TATA box-binding protein (TBP): present in archaea and protein.	0.764