Q23Q78_TETTS protein (Tetrahymena thermophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Q23Q78_TETTS

PHD-finger protein. (467 aa)

Predicted Functional Partners:

I7LZW0_TETTS

0.780

I7LTY8_TETTS

0.727

I7M0G7_TETTS

0.727

I7M280_TETTS

0.727

I7MHH6_TETTS

0.727

Q22AS3_TETTS

0.727

Q23RG4_TETTS

0.727

Q24CW0_TETTS

0.727

W7XA88_TETTS

0.727

HHF1

0.723

Your Current Organism:

Tetrahymena thermophila

NCBI taxonomy Id: 312017
Other names: T. thermophila SB210, Tetrahymena thermophila SB210

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HHF1	I7LTY8_TETTS	P69152	I7LTY8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Sulfite exporter TauE/SafE.	0.762
HHF1	I7LZW0_TETTS	P69152	I7LZW0	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Splicing factor 3B subunit 1.	0.591
HHF1	I7M0G7_TETTS	P69152	I7M0G7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Sulfite exporter TauE/SafE.	0.762
HHF1	I7M280_TETTS	P69152	I7M280	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	SNF2 family amine-terminal protein.	0.762
HHF1	I7MHH6_TETTS	P69152	I7MHH6	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Sulfite exporter TauE/SafE.	0.762
HHF1	Q22AS3_TETTS	P69152	Q22AS3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Sulfite exporter TauE/SafE.	0.762
HHF1	Q23Q78_TETTS	P69152	Q23Q78	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	PHD-finger protein.	0.723
HHF1	Q23RG4_TETTS	P69152	Q23RG4	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	SNF2 family amine-terminal protein.	0.762
HHF1	Q24CW0_TETTS	P69152	Q24CW0	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Sulfite exporter TauE/SafE.	0.762
HHF1	W7XA88_TETTS	P69152	W7XA88	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Sulfite exporter TauE/SafE.	0.762
I7LTY8_TETTS	HHF1	I7LTY8	P69152	Sulfite exporter TauE/SafE.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.762
I7LTY8_TETTS	I7LZW0_TETTS	I7LTY8	I7LZW0	Sulfite exporter TauE/SafE.	Splicing factor 3B subunit 1.	0.536
I7LTY8_TETTS	Q23Q78_TETTS	I7LTY8	Q23Q78	Sulfite exporter TauE/SafE.	PHD-finger protein.	0.727
I7LZW0_TETTS	HHF1	I7LZW0	P69152	Splicing factor 3B subunit 1.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.591
I7LZW0_TETTS	I7LTY8_TETTS	I7LZW0	I7LTY8	Splicing factor 3B subunit 1.	Sulfite exporter TauE/SafE.	0.536
I7LZW0_TETTS	I7M0G7_TETTS	I7LZW0	I7M0G7	Splicing factor 3B subunit 1.	Sulfite exporter TauE/SafE.	0.536
I7LZW0_TETTS	I7M280_TETTS	I7LZW0	I7M280	Splicing factor 3B subunit 1.	SNF2 family amine-terminal protein.	0.536
I7LZW0_TETTS	I7MHH6_TETTS	I7LZW0	I7MHH6	Splicing factor 3B subunit 1.	Sulfite exporter TauE/SafE.	0.536
I7LZW0_TETTS	Q22AS3_TETTS	I7LZW0	Q22AS3	Splicing factor 3B subunit 1.	Sulfite exporter TauE/SafE.	0.536
I7LZW0_TETTS	Q23Q78_TETTS	I7LZW0	Q23Q78	Splicing factor 3B subunit 1.	PHD-finger protein.	0.780